mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
58 lines
1.5 KiB
YAML
58 lines
1.5 KiB
YAML
name: nanoplot
|
|
description: Run NanoPlot on nanopore-sequenced reads
|
|
keywords:
|
|
- quality control
|
|
- qc
|
|
- fastq
|
|
- sequencing summary
|
|
- nanopore
|
|
tools:
|
|
- nanoplot:
|
|
description: |
|
|
NanoPlot is a tool for ploting long-read sequencing data and
|
|
alignment.
|
|
homepage: http://nanoplot.bioinf.be
|
|
documentation: https://github.com/wdecoster/NanoPlot
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq:
|
|
type: file
|
|
description: |
|
|
List of input basecalled-FastQ files.
|
|
- summary_txt:
|
|
type: file
|
|
description: |
|
|
List of sequencing_summary.txt files from running basecalling.
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- html:
|
|
type: file
|
|
description: NanoPlot report
|
|
pattern: "*{.html}"
|
|
- png:
|
|
type: file
|
|
description: Plots generated by NanoPlot
|
|
pattern: "*{.png}"
|
|
- txt:
|
|
type: file
|
|
description: Stats from NanoPlot
|
|
pattern: "*{.txt}"
|
|
- log:
|
|
type: file
|
|
description: log file of NanoPlot run
|
|
pattern: "*{.log}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@yuukiiwa"
|