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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
33 lines
908 B
YAML
33 lines
908 B
YAML
name: pangolin
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description: Phylogenetic Assignment of Named Global Outbreak LINeages
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keywords:
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- covid
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- pangolin
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- lineage
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tools:
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- star:
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description: |
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Phylogenetic Assignment of Named Global Outbreak LINeages
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homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
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manual: https://github.com/cov-lineages/pangolin#pangolearn-description
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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- fasta:
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type: file
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description: |
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The genome assembly to be evaluated
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output:
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- report:
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type: file
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description: Pangolin lineage report
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pattern: "*.{csv}"
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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