nf-core_modules/modules/rapidnj/meta.yml
Gregor Sturm 906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00

37 lines
1.3 KiB
YAML

name: rapidnj
description: Produces a Newick format phylogeny from a multiple sequence alignment using a Neighbour-Joining algorithm. Capable of bacterial genome size alignments.
keywords:
- phylogeny
- newick
- neighbour-joining
tools:
- rapidnj:
description: RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.
homepage: https://birc.au.dk/software/rapidnj
documentation: https://birc.au.dk/software/rapidnj
tool_dev_url: https://github.com/somme89/rapidNJ
doi: "doi:10.1007/978-3-540-87361-7_10"
licence: ['GPL v2']
input:
- alignment:
type: file
description: A FASTA format multiple sequence alignment file
pattern: "*.{fasta,fas,fa,mfa}"
output:
- version:
type: file
description: File containing software version
pattern: "versions.yml"
- phylogeny:
type: file
description: A phylogeny in Newick format
pattern: "*.{tre}"
- stockholm_alignment:
type: file
description: An alignment in Stockholm format
pattern: "*.{sth}"
authors:
- "@aunderwo"
- "@avantonder"