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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: seqwish_induce
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description: Induce a variation graph in GFA format from alignments in PAF format
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keywords:
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- induce
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- paf
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- gfa
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- graph
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- variation graph
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tools:
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- seqwish:
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description: |
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seqwish implements a lossless conversion from pairwise alignments between
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sequences to a variation graph encoding the sequences and their alignments.
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homepage: https://github.com/ekg/seqwish
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documentation: https://github.com/ekg/seqwish
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- paf:
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type: file
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description: PAF file of alignments
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pattern: "*.{paf,paf.gz}"
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- fasta:
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type: file
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description: FASTA file used to generate alignments
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pattern: "*.{fa,fa.gz,fasta,fasta.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gfa:
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type: file
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description: Variation graph in GFA 1.0 format
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pattern: "*.{gfa}"
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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authors:
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- "@heuermh"
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