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https://github.com/MillironX/nf-core_modules.git
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9294259eea
* add bcl2fastq * test fixes * fixed tests * add tests to workflow * change container source
23 lines
757 B
Text
23 lines
757 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCL2FASTQ } from '../../../modules/bcl2fastq/main.nf'
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include { UNTAR } from '../../../modules/untar/main.nf'
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workflow test_bcl2fastq {
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ch_flowcell = Channel.value([
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[id:'test', lane:1 ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_flowcell_samplesheet'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_flowcell'], checkIfExists: true)])
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ch_flowcell
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.multiMap { meta, ss, run ->
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samplesheet: [meta, ss]
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tar: [meta, run]
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}.set{ ch_fc_split }
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ch_flowcell_untar = ch_fc_split.samplesheet.join( UNTAR ( ch_fc_split.tar ).untar )
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BCL2FASTQ (ch_flowcell_untar)
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}
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