mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
9402595711
* First step into creating a seqtk/mergepe module to interleave fastQ input * First rewrite of main.nf to make the module perform the desired (interleave/merge of pe reads) task * Modifications to test the new seqtk/mergepe module. * Improving the seqtk/mergepe module to output single end reads as well, and making sure tests work * Modified so that gzip uses -n and that single read entries are symlinked with ln -s instead of copied, therefore updated test.yml as well. * Fix trailing whitespaces Co-authored-by: Daniel Lundin <daniel.lundin@lnu.se>
17 lines
637 B
YAML
17 lines
637 B
YAML
- name: seqtk mergepe test_seqtk_mergepe_single_end
|
|
command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- seqtk/mergepe
|
|
- seqtk
|
|
files:
|
|
- path: output/seqtk/test.processed.fastq.gz
|
|
md5sum: e325ef7deb4023447a1f074e285761af
|
|
|
|
- name: seqtk mergepe test_seqtk_mergepe_paired_end
|
|
command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- seqtk/mergepe
|
|
- seqtk
|
|
files:
|
|
- path: output/seqtk/test.processed.fastq.gz
|
|
md5sum: 3f094ef62d9bfe06aa25174a06bc7d04
|