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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
name: medaka
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description: A tool to create consensus sequences and variant calls from nanopore sequencing data
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keywords:
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- assembly
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- polishing
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- nanopore
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tools:
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- medaka:
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description: Neural network sequence error correction.
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homepage: https://nanoporetech.github.io/medaka/index.html
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documentation: https://nanoporetech.github.io/medaka/index.html
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tool_dev_url: https://github.com/nanoporetech/medaka
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doi: ""
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licence: ["Mozilla Public License 2.0"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input nanopore fasta/FastQ files
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pattern: "*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}"
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- assembly:
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type: file
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description: Genome assembly
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pattern: "*.{fasta,fa}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- assembly:
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type: file
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description: Polished genome assembly
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pattern: "*.fa.gz"
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authors:
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- "@avantonder"
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