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940d7fe9d6
* Move MetaPhlAn3 to a subcommand and add mergemetaphlantables * Add mergemetaphlantables tests * Add mergemetaphlantables to test config * Apply suggestions from code review * Revert now unnecessary input channel name change and now document * Update modules/metaphlan3/mergemetaphlantables/main.nf * Require database directory and more details in description
8 lines
468 B
YAML
8 lines
468 B
YAML
- name: metaphlan3 mergemetaphlantables test_metaphlan3_mergemetaphlantables
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command: nextflow run ./tests/modules/metaphlan3/mergemetaphlantables -entry test_metaphlan3_mergemetaphlantables -c ./tests/config/nextflow.config -c ./tests/modules/metaphlan3/mergemetaphlantables/nextflow.config
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tags:
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- metaphlan3
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- metaphlan3/mergemetaphlantables
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files:
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- path: output/metaphlan3/merged_abundance_table.txt
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contains: ["clade_name NCBI_tax_id "]
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