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https://github.com/MillironX/nf-core_modules.git
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94619a3faf
* add annotate * add models * add compound * add score * update annotate recipe * update meta and main * main updates * add test for annotate * update all tests * refactor * update tests * fix conda issue * review suggestions
22 lines
615 B
Text
22 lines
615 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GENMOD_COMPOUND } from '../../../../modules/genmod/compound/main.nf'
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['genmod_score_vcf_gz'], checkIfExists: true)
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]
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fam = file(params.test_data['homo_sapiens']['genome']['justhusky_ped'], checkIfExists: true)
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config = file(params.test_data['homo_sapiens']['illumina']['rank_model'], checkIfExists: true)
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workflow test_genmod_compound {
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GENMOD_COMPOUND ( input )
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}
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workflow test_genmod_compound_stub {
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GENMOD_COMPOUND ( input )
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}
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