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https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
27 lines
1.3 KiB
YAML
Executable file
27 lines
1.3 KiB
YAML
Executable file
- name: cnvkit
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command: nextflow run ./tests/modules/cnvkit/ -entry test_cnvkit -c tests/config/nextflow.config
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tags:
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- cnvkit
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files:
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- path: output/cnvkit/baits.target.bed
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md5sum: 26d25ff2d6c45b6d92169b3559c6acdb
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- path: output/cnvkit/baits.antitarget.bed
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/cnvkit/reference.cnn
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md5sum: ac99c1ad8b917b96ae15119146c91ab9
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- path: output/cnvkit/test.paired_end.sorted.targetcoverage.cnn
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md5sum: 3fe80b6013ffc3e9968345e810158215
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- path: output/cnvkit/test.paired_end.sorted.antitargetcoverage.cnn
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md5sum: 203caf8cef6935bb50b4138097955cb8
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- path: output/cnvkit/test.single_end.sorted.targetcoverage.cnn
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md5sum: aa8a018b1d4d1e688c9f9f6ae01bf4d7
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- path: output/cnvkit/test.single_end.sorted.antitargetcoverage.cnn
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md5sum: 203caf8cef6935bb50b4138097955cb8
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- path: output/cnvkit/test.paired_end.sorted.cnr
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md5sum: 7e37d73ab604dbc3fe4ebb56aca9bdc3
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- path: output/cnvkit/test.paired_end.sorted.cns
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md5sum: 060af1aa637ed51812af19bcce24fcfe
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- path: output/cnvkit/test.paired_end.sorted.bintest.cns
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md5sum: 6544d979475def8a9f69ba42a985668d
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- path: output/cnvkit/test.paired_end.sorted.call.cns
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md5sum: f2ca59b4d50b0c317adc526c1b99b622
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