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https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
51 lines
1.8 KiB
YAML
51 lines
1.8 KiB
YAML
- name: shovill with spades
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command: nextflow run ./tests/modules/shovill -entry test_shovill -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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- path: output/shovill/contigs.gfa
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md5sum: 277af5d8ae8a0d2432db59a316226828
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- path: output/shovill/spades.fasta
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md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
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# MD5sum not reproducible (timestamp)
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- path: output/shovill/contigs.fa
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- path: output/shovill/shovill.corrections
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- path: output/shovill/shovill.log
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- name: shovill with megahit
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command: nextflow run ./tests/modules/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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- path: output/shovill/shovill.corrections
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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# MD5sum not reproducible (timestamp, contig order)
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- path: output/shovill/contigs.fa
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- path: output/shovill/contigs.fastg
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- path: output/shovill/megahit.fasta
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- path: output/shovill/shovill.log
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- name: shovill with skesa
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command: nextflow run ./tests/modules/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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- path: output/shovill/shovill.corrections
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/shovill/skesa.fasta
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md5sum: 8157837dbe8315922f588dafa7af5ef8
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# MD5sum not reproducible (timestamp)
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- path: output/shovill/contigs.fa
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- path: output/shovill/shovill.log
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- name: shovill with velvet
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command: nextflow run ./tests/modules/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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# MD5sum not reproducible (timestamp, contig order)
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- path: output/shovill/contigs.fa
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- path: output/shovill/contigs.LastGraph
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- path: output/shovill/shovill.corrections
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- path: output/shovill/shovill.log
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- path: output/shovill/velvet.fasta
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