mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
51 lines
1.8 KiB
YAML
51 lines
1.8 KiB
YAML
- name: shovill with spades
|
|
command: nextflow run ./tests/modules/shovill -entry test_shovill -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
files:
|
|
- path: output/shovill/contigs.gfa
|
|
md5sum: 277af5d8ae8a0d2432db59a316226828
|
|
- path: output/shovill/spades.fasta
|
|
md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
|
|
# MD5sum not reproducible (timestamp)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/shovill.corrections
|
|
- path: output/shovill/shovill.log
|
|
|
|
- name: shovill with megahit
|
|
command: nextflow run ./tests/modules/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
files:
|
|
- path: output/shovill/shovill.corrections
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
# MD5sum not reproducible (timestamp, contig order)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/contigs.fastg
|
|
- path: output/shovill/megahit.fasta
|
|
- path: output/shovill/shovill.log
|
|
|
|
- name: shovill with skesa
|
|
command: nextflow run ./tests/modules/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
files:
|
|
- path: output/shovill/shovill.corrections
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/shovill/skesa.fasta
|
|
md5sum: 8157837dbe8315922f588dafa7af5ef8
|
|
# MD5sum not reproducible (timestamp)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/shovill.log
|
|
|
|
- name: shovill with velvet
|
|
command: nextflow run ./tests/modules/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
files:
|
|
# MD5sum not reproducible (timestamp, contig order)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/contigs.LastGraph
|
|
- path: output/shovill/shovill.corrections
|
|
- path: output/shovill/shovill.log
|
|
- path: output/shovill/velvet.fasta
|