mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
14 lines
621 B
Text
14 lines
621 B
Text
#!/usr/bin/env nextflow
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ALLELECOUNTER } from '../../../software/allelecounter/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_allelecounter {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
|
|
]
|
|
positions = [ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true) ]
|
|
|
|
ALLELECOUNTER ( input, positions )
|
|
}
|