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894349b9b5
* Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map.
19 lines
846 B
YAML
19 lines
846 B
YAML
- name: Run bismark align single-end test workflow
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command: nextflow run ./tests/software/bismark/align -entry test_bismark_align_single_end -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/align
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files:
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- path: output/test_single_end/test.methylated_1_bismark_bt2.bam
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md5sum: dca4ba9ff705b70446f812e59bdb1a32
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- path: output/test_single_end/test.methylated_1_bismark_bt2_SE_report.txt
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- name: Run bismark align paired-end test workflow
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command: nextflow run ./tests/software/bismark/align -entry test_bismark_align_paired_end -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/align
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files:
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- path: output/test_paired_end/test.methylated_1_bismark_bt2_pe.bam
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md5sum: 43943b1f30d056fcbd9ed26061ea0583
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- path: output/test_paired_end/test.methylated_1_bismark_bt2_PE_report.txt
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