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https://github.com/MillironX/nf-core_modules.git
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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
41 lines
1.7 KiB
YAML
41 lines
1.7 KiB
YAML
- name: bowtie2 align single-end
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command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2/align
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files:
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- path: ./output/bowtie2/test.bam
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- path: ./output/bowtie2/test.bowtie2.log
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- path: ./output/index/bowtie2/genome.3.bt2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/index/bowtie2/genome.2.bt2
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md5sum: 47b153cd1319abc88dda532462651fcf
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- path: ./output/index/bowtie2/genome.1.bt2
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md5sum: cbe3d0bbea55bc57c99b4bfa25b5fbdf
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- path: ./output/index/bowtie2/genome.4.bt2
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- path: ./output/index/bowtie2/genome.rev.1.bt2
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md5sum: 52be6950579598a990570fbcf5372184
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- path: ./output/index/bowtie2/genome.rev.2.bt2
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md5sum: e3b4ef343dea4dd571642010a7d09597
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- name: bowtie2 align paired-end
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command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2/align
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files:
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- path: ./output/bowtie2/test.bam
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- path: ./output/bowtie2/test.bowtie2.log
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- path: ./output/index/bowtie2/genome.3.bt2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/index/bowtie2/genome.2.bt2
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md5sum: 47b153cd1319abc88dda532462651fcf
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- path: ./output/index/bowtie2/genome.1.bt2
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md5sum: cbe3d0bbea55bc57c99b4bfa25b5fbdf
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- path: ./output/index/bowtie2/genome.4.bt2
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md5sum: c25be5f8b0378abf7a58c8a880b87626
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- path: ./output/index/bowtie2/genome.rev.1.bt2
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md5sum: 52be6950579598a990570fbcf5372184
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- path: ./output/index/bowtie2/genome.rev.2.bt2
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md5sum: e3b4ef343dea4dd571642010a7d09597
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