nf-core_modules/tests/software/bwa/mem/test.yml
Jose Espinosa-Carrasco 0bbd7acfc4
Fix number of cpus for modules with piped tools (#499)
* Split CPUs for piped commands

* Fix tests, bams no md5 check
2021-05-18 09:52:00 +02:00

35 lines
1.3 KiB
YAML

- name: bwa mem single-end
command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_single_end -c tests/config/nextflow.config
tags:
- bwa
- bwa/mem
files:
- path: ./output/bwa/test.bam
- path: ./output/index/bwa/genome.bwt
md5sum: 0469c30a1e239dd08f68afe66fde99da
- path: ./output/index/bwa/genome.amb
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
- path: ./output/index/bwa/genome.ann
md5sum: c32e11f6c859f166c7525a9c1d583567
- path: ./output/index/bwa/genome.pac
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
- path: ./output/index/bwa/genome.sa
md5sum: ab3952cabf026b48cd3eb5bccbb636d1
- name: bwa mem paired-end
command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
tags:
- bwa
- bwa/mem
files:
- path: ./output/bwa/test.bam
- path: ./output/index/bwa/genome.bwt
md5sum: 0469c30a1e239dd08f68afe66fde99da
- path: ./output/index/bwa/genome.amb
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
- path: ./output/index/bwa/genome.ann
md5sum: c32e11f6c859f166c7525a9c1d583567
- path: ./output/index/bwa/genome.pac
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
- path: ./output/index/bwa/genome.sa
md5sum: ab3952cabf026b48cd3eb5bccbb636d1