nf-core_modules/tests/software/bwamem2/index/main.nf
FriederikeHanssen 555f1710e0
Update test paths in bwa mappers (#387)
* Update test paths in bwa mappers

* Fix indentation

* indices pass lcoally now

* no idea how they could ever pass before, Tests pass locally no

* Update samtools and bwamem2 versions

* Correct mulled containers + md5
2021-03-25 09:24:21 +00:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BWAMEM2_INDEX } from '../../../../software/bwamem2/index/main.nf' addParams( options: [:] )
workflow test_bwamem2_index {
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
BWAMEM2_INDEX ( fasta )
}