mirror of
https://github.com/MillironX/nf-core_modules.git
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c8168bc351
* Update LAST to version 1238. * Update functions.nf to the latest devel version. * Update test MD5sums after updating software version. * Make portable on MacOS * Allow input alignments to be uncompressed. While the strategy in this family of modules is to make all inputs and outputs compressed, this change might be useful to some users. As of LAST 2138, `last/split` does not allow its input to be compressed. * Search for .des file, that is guaranteed to be unique. Some LAST indexes have more than one .bck file and it makes the name detection crash. In this commit, I also standardise how the names are detected. * Use value input channel and optional output channels to handle formats. As discussed on Slack, it is preferred to use a value input channel instead of sneaking options through `params.args2` or `params.format` as we did. Likewise, optional output channels with clearly labeled format are preferred to 'catch-all' wildcards.
45 lines
1.9 KiB
YAML
45 lines
1.9 KiB
YAML
- name: last lastal test_last_lastal_with_dummy_param_file
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command: nextflow run tests/software/last/lastal -entry test_last_lastal_with_dummy_param_file -c tests/config/nextflow.config
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tags:
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- last
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- last/lastal
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files:
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- path: output/last/contigs.genome.maf.gz
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md5sum: 2fc56553282d0826310bdef16a55e587
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- path: output/untar/lastdb/genome.bck
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md5sum: 5519879b9b6c4d1fc508da7f17f88f2e
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- path: output/untar/lastdb/genome.des
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md5sum: 3a9ea6d336e113a74d7fdca5e7b623fc
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- path: output/untar/lastdb/genome.prj
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md5sum: 489715f14b0fea6273822696e72357f9
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- path: output/untar/lastdb/genome.sds
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md5sum: 2cd381f4f8a9c52cfcd323a2863eccb2
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- path: output/untar/lastdb/genome.ssp
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md5sum: 4137fb6fe9df2b3d78d5b960390aac7b
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- path: output/untar/lastdb/genome.suf
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md5sum: 1895efa8653e8e9bd3605cff0408ed33
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- path: output/untar/lastdb/genome.tis
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md5sum: b7c40f06b1309dc6f37849eeb86dfd22
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- name: last lastal test_last_lastal_with_real_param_file
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command: nextflow run tests/software/last/lastal -entry test_last_lastal_with_real_param_file -c tests/config/nextflow.config
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tags:
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- last
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- last/lastal
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files:
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- path: output/last/contigs.genome.maf.gz
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md5sum: f50557bed5430b42de7b0d5d61075cf0
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- path: output/untar/lastdb/genome.bck
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md5sum: 5519879b9b6c4d1fc508da7f17f88f2e
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- path: output/untar/lastdb/genome.des
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md5sum: 3a9ea6d336e113a74d7fdca5e7b623fc
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- path: output/untar/lastdb/genome.prj
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md5sum: 489715f14b0fea6273822696e72357f9
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- path: output/untar/lastdb/genome.sds
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md5sum: 2cd381f4f8a9c52cfcd323a2863eccb2
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- path: output/untar/lastdb/genome.ssp
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md5sum: 4137fb6fe9df2b3d78d5b960390aac7b
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- path: output/untar/lastdb/genome.suf
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md5sum: 1895efa8653e8e9bd3605cff0408ed33
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- path: output/untar/lastdb/genome.tis
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md5sum: b7c40f06b1309dc6f37849eeb86dfd22
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