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https://github.com/MillironX/nf-core_modules.git
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b6e4ecabba
* Bump pangolin version * Add nextclade to software list * Add nextclade module * Update md5sum for Pangolin due to version bump * Adding some URL to meta.yml * Adding new line at end of file Co-authored-by: JoseEspinosa <kadomu@gmail.com>
33 lines
1.1 KiB
Text
Executable file
33 lines
1.1 KiB
Text
Executable file
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { NEXTCLADE } from '../../../software/nextclade/main.nf' addParams( options: [:] )
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workflow test_nextclade_json {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'json' )
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}
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workflow test_nextclade_csv {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'csv' )
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}
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workflow test_nextclade_tsv {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'tsv' )
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}
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workflow test_nextclade_tree {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'tree' )
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}
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