nf-core_modules/tests/software/qcat/test.yml at 95dfa7bc8d6ebef115ce6f4c1e9babc3635db623 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-21 15:52:05 +00:00

Harshil Patel 466ab67808

Fixes for nanoseq modules (#479 )

* Fix minimap2 index module

* Fix minimap2 index tests

* Fix graphmap2 index module

* Fix graphmap2 module

* Fix ECLint

* Fix bedtools bamtobed module

* Fix tests for bedtools bamtobed module

* Add tag for graphmap2 align module

* Fix EClint

* Fix qcat module

* Add md5sum for graphmap2/align module

* Remove non-started test data file

* Remove md5sum for graphmap2 align

2021-04-30 15:57:43 +01:00

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 - name: qcat
   command: nextflow run ./tests/software/qcat -entry test_qcat -c tests/config/nextflow.config
   tags:
     - qcat
   files:
     - path: ./output/qcat/fastq/barcode06.fastq.gz
     - path: ./output/qcat/fastq/barcode12.fastq.gz
     - path: ./output/qcat/fastq/none.fastq.gz