nf-core_modules/tests/software/rseqc/bamstat/test.yml at 95dfa7bc8d6ebef115ce6f4c1e9babc3635db623 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 13:23:09 +00:00

Kevin Menden 1d874bb0d0

Finish rseqc modules (#439 )

* initial 'modules create' of minia

* fixed tests

* finished meta.yml

* fixed filters.yml

* resolved issues in pytest_software.yml

* add newline

* Update software/minia/main.nf

* fixing a bunch of module tests

* remove vscode

* fixed minia

* added rseqc/bamstat tests

* added tests/meta.yml for rseqc/inferexperiment

* added test/meta.yml for rseqc/inner_distances

* added meta.yml and tests/main.nf for junctionannotation (test not running)

* added test/meta.yml for rseqc/readdistribution

* finished test/meta.yml for rseqc/readduplication

* added entries to pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-04-13 08:49:32 +01:00

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YAML

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 - name: rseqc bamstat test_rseqc_bamstat
   command: nextflow run tests/software/rseqc/bamstat -entry test_rseqc_bamstat -c tests/config/nextflow.config
   tags:
     - rseqc
     - rseqc/bamstat
   files:
     - path: output/rseqc/test.bam_stat.txt
       md5sum: 2675857864c1d1139b2a19d25dc36b09