mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 08:12:03 +00:00
95e02f913f
* Update comment style on functions.nf files * Update test main.nf comments * Add meta for ggread
29 lines
860 B
Text
29 lines
860 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SEQTK_SAMPLE } from '../../../../software/seqtk/sample/main.nf' addParams( options: [ 'args': '-s100', 'suffix':'.sampled' ] )
|
|
|
|
//
|
|
// Test with single-end data
|
|
//
|
|
workflow test_seqtk_sample_single_end {
|
|
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
|
|
|
|
SEQTK_SAMPLE ( input, 250000 )
|
|
}
|
|
|
|
//
|
|
// Test with paired-end data
|
|
//
|
|
workflow test_seqtk_sample_paired_end {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
|
|
]
|
|
|
|
SEQTK_SAMPLE ( input, 250000 )
|
|
}
|