mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
4f78d40b11
* New module for fasta_windows
* Upgraded the code and the test to v2.4
* Standard list of Fasta file extensions
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Output file (and/or directory) names SHOULD just consist of only ${prefix}
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
57 lines
1.5 KiB
YAML
57 lines
1.5 KiB
YAML
name: "fastawindows"
|
|
description: Quickly compute statistics over a fasta file in windows.
|
|
keywords:
|
|
- genome
|
|
- fasta
|
|
- tsv
|
|
- bed
|
|
tools:
|
|
- "fastawindows":
|
|
description: "fasta_windows is a tool written for Darwin Tree of Life chromosomal level genome assemblies. The executable takes a fasta formatted file and calculates some statistics of interest in windows"
|
|
homepage: "https://github.com/tolkit/fasta_windows"
|
|
documentation: "None"
|
|
licence: "['MIT']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: FASTA file
|
|
pattern: "*.{fa,fasta,fna}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- freq:
|
|
type: file
|
|
description: TSV file with frequencies and statistics
|
|
pattern: "*.{tsv}"
|
|
- mononuc:
|
|
type: file
|
|
description: TSV file with mononucleotide counts
|
|
pattern: "*.{tsv}"
|
|
- dinuc:
|
|
type: file
|
|
description: TSV file with dinucleotide counts
|
|
pattern: "*.{tsv}"
|
|
- trinuc:
|
|
type: file
|
|
description: TSV file with trinucleotide counts
|
|
pattern: "*.{tsv}"
|
|
- tetranuc:
|
|
type: file
|
|
description: TSV file with tetranucleotide counts
|
|
pattern: "*.{tsv}"
|
|
authors:
|
|
- "@muffato"
|