nf-core_modules/modules/samtools/collate/meta.yml
Priyanka Surana ab4c2e440d
samtools collate module (#2078)
* samtools collate module

* prettier fix

* prettier fix

* added cram functionality
2022-09-21 14:12:59 +01:00

44 lines
1.1 KiB
YAML

name: "samtools_collate"
description: shuffles and groups reads together by their names
keywords:
- collate
- bam
tools:
- "samtools":
description: "Tools for dealing with SAM, BAM and CRAM files"
homepage: "http://www.htslib.org"
documentation: "https://www.htslib.org/doc/samtools-collate.html"
tool_dev_url: "https://github.com/samtools/samtools"
doi: "10.1093/bioinformatics/btp352"
licence: "['MIT']"
input:
# Only when we have meta
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
output:
#Only when we have meta
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- output:
type: file
description: Collated BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
authors:
- "@priyanka-surana"