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0bdd589163
* added module endorspy and test * added endorspy * Fixed spaces and remove unnecessary lines from test * added extra new line to test.yml * added a prefix to to avoid name collision * Update modules/endorspy/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review * Update modules/endorspy/main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
12 lines
262 B
Text
12 lines
262 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName:SAMTOOLS_VIEW {
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ext.args = "-q 30 -b"
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}
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withName:SAMTOOLS_FLAGSTAT2 {
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ext.prefix = "test.filtered"
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}
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}
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