millironx/nf-core_modules
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nf-core_modules/modules/gatk4
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FriederikeHanssen 967fb22ded
Update versions (#1292) 
* Update versions

* update checksums + remove variables as input for applyvqsr

* sneak in removal of values and provide them via modules.config

* update another checksum

* more checksums

* move vairable to config

* remove controlfreec, wrong branch

* add line break
2022-02-15 11:29:36 +01:00
..
applybqsr Update versions (#1292) 2022-02-15 11:29:36 +01:00
applyvqsr Update versions (#1292) 2022-02-15 11:29:36 +01:00
baserecalibrator Update versions (#1292) 2022-02-15 11:29:36 +01:00
bedtointervallist Update versions (#1292) 2022-02-15 11:29:36 +01:00
calculatecontamination Update versions (#1292) 2022-02-15 11:29:36 +01:00
createsequencedictionary Update versions (#1292) 2022-02-15 11:29:36 +01:00
createsomaticpanelofnormals Update versions (#1292) 2022-02-15 11:29:36 +01:00
estimatelibrarycomplexity Update versions (#1292) 2022-02-15 11:29:36 +01:00
fastqtosam Update versions (#1292) 2022-02-15 11:29:36 +01:00
filtermutectcalls Update versions (#1292) 2022-02-15 11:29:36 +01:00
gatherbqsrreports Update versions (#1292) 2022-02-15 11:29:36 +01:00
genomicsdbimport Update versions (#1292) 2022-02-15 11:29:36 +01:00
genotypegvcfs Update versions (#1292) 2022-02-15 11:29:36 +01:00
getpileupsummaries Update versions (#1292) 2022-02-15 11:29:36 +01:00
haplotypecaller Update versions (#1292) 2022-02-15 11:29:36 +01:00
indexfeaturefile Update versions (#1292) 2022-02-15 11:29:36 +01:00
intervallisttools Update versions (#1292) 2022-02-15 11:29:36 +01:00
learnreadorientationmodel Update versions (#1292) 2022-02-15 11:29:36 +01:00
markduplicates Update versions (#1292) 2022-02-15 11:29:36 +01:00
mergebamalignment Update versions (#1292) 2022-02-15 11:29:36 +01:00
mergevcfs Update versions (#1292) 2022-02-15 11:29:36 +01:00
mutect2 Update versions (#1292) 2022-02-15 11:29:36 +01:00
revertsam Update versions (#1292) 2022-02-15 11:29:36 +01:00
samtofastq Update versions (#1292) 2022-02-15 11:29:36 +01:00
splitncigarreads Update versions (#1292) 2022-02-15 11:29:36 +01:00
variantfiltration Update versions (#1292) 2022-02-15 11:29:36 +01:00
variantrecalibrator Update versions (#1292) 2022-02-15 11:29:36 +01:00