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75 lines
2.2 KiB
YAML
75 lines
2.2 KiB
YAML
name: "merquryfk_katcomp"
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description: A reimplemenation of Kat Comp to work with FastK databases
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keywords:
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- fastk
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- k-mer
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- compare
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tools:
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- "merquryfk":
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description: "FastK based version of Merqury"
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homepage: "https://github.com/thegenemyers/MERQURY.FK"
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documentation: ""
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tool_dev_url: "https://github.com/thegenemyers/MERQURY.FK"
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doi: ""
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licence: "https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastk1_hist:
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type: file
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description: A histogram files from the program FastK
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pattern: "*.hist"
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- fastk1_ktab:
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type: file
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description: Histogram ktab files from the program FastK (option -t)
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pattern: "*.ktab*"
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- fastk2_hist:
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type: file
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description: A histogram files from the program FastK
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pattern: "*.hist"
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- fastk2_ktab:
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type: file
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description: Histogram ktab files from the program FastK (option -t)
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pattern: "*.ktab*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- filled_png:
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type: file
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description: Comparison of Kmers between sample 1 and 2 in filled PNG format.
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pattern: "*.fi.png"
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- line_png:
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type: file
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description: Comparison of Kmers between sample 1 and 2 in line PNG format.
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pattern: "*.ln.png"
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- stacked_png:
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type: file
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description: Comparison of Kmers between sample 1 and 2 in stacked PNG format.
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pattern: "*.st.png"
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- filled_pdf:
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type: file
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description: Comparison of Kmers between sample 1 and 2 in filled PDF format.
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pattern: "*.fi.pdf"
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- line_pdf:
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type: file
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description: Comparison of Kmers between sample 1 and 2 in line PDF format.
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pattern: "*.ln.pdf"
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- stacked_pdf:
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type: file
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description: Comparison of Kmers between sample 1 and 2 in stacked PDF format.
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pattern: "*.st.pdf"
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authors:
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- "@mahesh-panchal"
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