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5c463ca6b4
* update kleborate version info * fix stderr capture * few more version fixes * fix version info on more tools
31 lines
928 B
Text
31 lines
928 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HIFIASM } from '../../../modules/hifiasm/main.nf' addParams( options: [args:'-f0'] )
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/*
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* Test with long reads only
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*/
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workflow test_hifiasm_hifi_only {
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input = [
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[ id:'test' ], // meta map
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[ file(params.test_data['homo_sapiens']['pacbio']['hifi'], checkIfExists: true) ]
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]
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HIFIASM ( input, [], [], false )
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}
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/*
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* Test with parental reads for phasing
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*/
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workflow test_hifiasm_with_parental_reads {
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input = [
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[ id:'test' ], // meta map
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[ file(params.test_data['homo_sapiens']['pacbio']['hifi'], checkIfExists: true) ]
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]
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paternal_kmer_dump = file(params.test_data['homo_sapiens']['illumina']['test_yak'], checkIfExists: true)
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maternal_kmer_dump = file(params.test_data['homo_sapiens']['illumina']['test2_yak'], checkIfExists: true)
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HIFIASM ( input, paternal_kmer_dump, maternal_kmer_dump, true )
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}
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