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a4943a9e57
* add new module samtools_depth * fixed main.nf for samtools/depth * add new module mtnucratio * fix main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * layout in main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
14 lines
402 B
Text
14 lines
402 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MTNUCRATIO } from '../../../modules/mtnucratio/main.nf' addParams( options: [:] )
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workflow test_mtnucratio {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_single_end_sorted_bam'], checkIfExists: true)]
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mt_id = 'mt_id'
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MTNUCRATIO ( input, mt_id )
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}
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