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d1794d1934
* added template for tiddit/cov * test finished * quick fix to meta info * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * applying suggestions Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
23 lines
718 B
Text
23 lines
718 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TIDDIT_COV } from '../../../../modules/tiddit/cov/main.nf' addParams( options: [:] )
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workflow test_tiddit_cov {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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TIDDIT_COV ( input, fasta )
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}
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workflow test_tiddit_cov_no_ref {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
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TIDDIT_COV ( input, [] )
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}
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