mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
cf15ece503
* Remove def software line * Replace version with versions in emit statement * Fix default software names * Address Jose's comments in #780
44 lines
1.4 KiB
Text
44 lines
1.4 KiB
Text
// Import generic module functions
|
|
include { initOptions; saveFiles; getSoftwareName; getProcessName } from './functions'
|
|
|
|
params.options = [:]
|
|
options = initOptions(params.options)
|
|
|
|
process UNZIP {
|
|
tag "$archive"
|
|
label 'process_low'
|
|
publishDir "${params.outdir}",
|
|
mode: params.publish_dir_mode,
|
|
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) }
|
|
|
|
|
|
conda (params.enable_conda ? "bioconda::p7zip=15.09" : null)
|
|
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
|
|
container "https://depot.galaxyproject.org/singularity/p7zip:15.09--h2d50403_4"
|
|
} else {
|
|
container "quay.io/biocontainers/p7zip:15.09--h2d50403_4"
|
|
}
|
|
|
|
input:
|
|
path archive
|
|
|
|
output:
|
|
path "${archive.baseName}/", emit: unzipped_archive
|
|
path "versions.yml" , emit: versions
|
|
|
|
script:
|
|
|
|
if ( archive instanceof List && archive.name.size > 1 ) { exit 1, "[UNZIP] error: 7za only accepts a single archive as input. Please check module input." }
|
|
"""
|
|
7za \\
|
|
e \\
|
|
-o"${archive.baseName}"/ \\
|
|
$options.args \\
|
|
$archive
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
${getProcessName(task.process)}:
|
|
7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
|
|
END_VERSIONS
|
|
"""
|
|
}
|