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a066456735
* NGSCheckMate v1 * Add some tests for UMItools * Added tests for dedup * Include pytest * Delete main.nf * Delete meta.yml * Delete main.nf * Delete nextflow.config * Delete test.yml * add prettier * Add direct test on bam * Update tests/modules/umitools/dedup/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Update tests/modules/umitools/dedup/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Update tests/config/pytest_modules.yml Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Not ignore-umi Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
9 lines
200 B
Text
9 lines
200 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: UMITOOLS_EXTRACT {
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ext.args = '--bc-pattern="NNNN"'
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}
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}
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