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nf-core_modules/modules/manta
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nickhsmith 979e57b7ac
Manta consistancy (#1407) 
* update tests

* update

* update

* make the manta inputs consistant for germline/somatic/tumoronly

* match chromosomes to cram file (chr21)

* undo genotypegvfs

* undo genotypegvfs

* update manta input structure to match strelka. tuple(relevant input), path(fasta), path(fai)

* update tests

* fix typos

* fix typos

Co-authored-by: Smith Nicholas <smith@in.tum.de>
2022-03-18 13:30:03 +01:00
..
germline Manta consistancy (#1407) 2022-03-18 13:30:03 +01:00
somatic Manta consistancy (#1407) 2022-03-18 13:30:03 +01:00
tumoronly Manta consistancy (#1407) 2022-03-18 13:30:03 +01:00