nickhsmith 979e57b7ac Manta consistancy (#1407) ... * update tests * update * update * make the manta inputs consistant for germline/somatic/tumoronly * match chromosomes to cram file (chr21) * undo genotypegvfs * undo genotypegvfs * update manta input structure to match strelka. tuple(relevant input), path(fasta), path(fai) * update tests * fix typos * fix typos Co-authored-by: Smith Nicholas <smith@in.tum.de>		2022-03-18 13:30:03 +01:00
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config	Add BAM indexes as input for optitype module. (#1388)	2022-03-15 17:02:40 +01:00
modules	Manta consistancy (#1407)	2022-03-18 13:30:03 +01:00
subworkflows/nf-core	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
test_versions_yml.py	Fix for version file output check when performing an expected error test (#1242)	2022-01-28 10:32:36 +01:00