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https://github.com/MillironX/nf-core_modules.git
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983ba000c1
* Added fgbio callmolecularconsensusreads and sortbam modules * Fixed naming issue in meta.yml * fix: test.yml and config lint * Revert "fix: test.yml and config lint" This reverts commit 0453bc3a8dc3dab6997442a4349ee2241adcc380, which caused the sortbam tests to fail. * style: Fix test names * style: Remove trailing whitespace * fixed test.yml * fix: test data in sortbam * fix: data format * fix: test data for callmolecularconsensusreads * Corrected with updated test data * Apply suggestions from code review Applied changes from code review, mainly syntactical changes Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Sruthi Suresh <sps180004@ganymede.utdallas.edu> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
10 lines
437 B
YAML
10 lines
437 B
YAML
- name: fgbio callmolecularconsensusreads
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command: nextflow run tests/software/fgbio/callmolecularconsensusreads -entry test_fgbio_callmolecularconsensusreads -c tests/config/nextflow.config
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tags:
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- fgbio_callmolecularconsensusreads
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- fgbio
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files:
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- path: output/fgbio/test_molreads.bam
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md5sum: 7010bcdc037c36af13dbc370c06c76d3
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- path: output/fgbio/test_out.bam
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md5sum: d84e28fecc90c0752c543e934f10aa31
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