Matthias De Smet ec10f98d55 picard CollectWgsMetrics: update to new cli args (#1578) ... * update to new cli args * remove bam index from tuple, not needed by program * bump picard version Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>		2022-04-29 09:32:32 +02:00
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addorreplacereadgroups	Prettier (#1405)	2022-03-18 14:27:50 +01:00
cleansam	update args & convert to bam (#1355)	2022-02-25 11:06:39 -07:00
collecthsmetrics	update picard/collecthsmetrics (#1542)	2022-04-22 10:13:57 +02:00
collectmultiplemetrics	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
collectwgsmetrics	picard CollectWgsMetrics: update to new cli args (#1578)	2022-04-29 09:32:32 +02:00
createsequencedictionary	Prettier (#1405)	2022-03-18 14:27:50 +01:00
crosscheckfingerprints	Tool/crosscheckfingerprints (#1505)	2022-04-08 10:02:10 -04:00
filtersamreads	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
fixmateinformation	Prettier (#1405)	2022-03-18 14:27:50 +01:00
liftovervcf	Picard liftover vcf (#1431)	2022-04-07 07:50:58 -04:00
markduplicates	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
mergesamfiles	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
sortsam	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
sortvcf	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00