nf-core_modules/software/bcftools/consensus/meta.yml
2021-03-19 13:16:50 +01:00

48 lines
1.3 KiB
YAML

name: bcftools_consensus
description: Compresses VCF files
keywords:
- variant calling
- consensus
- VCF
tools:
- consensus:
description: |
Create consensus sequence by applying VCF variants to a reference fasta file.
homepage: http://samtools.github.io/bcftools/bcftools.html
documentation: http://www.htslib.org/doc/bcftools.html
doi: 10.1093/bioinformatics/btp352
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: VCF file
pattern: "*.{vcf}"
- tbi:
type: file
description: tabix index file
pattern: "*.{tbi}"
- fasta:
type: file
description: FASTA reference file
pattern: "*.{fasta,fa}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: FASTA reference consensus file
pattern: "*.{fasta,fa}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@joseespinosa"
- "@drpatelh"