mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
name: last_train
|
|
description: Find suitable score parameters for sequence alignment
|
|
keywords:
|
|
- LAST
|
|
- train
|
|
- fastq
|
|
- fasta
|
|
tools:
|
|
- last:
|
|
description: LAST finds & aligns related regions of sequences.
|
|
homepage: https://gitlab.com/mcfrith/last
|
|
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst
|
|
tool_dev_url: https://gitlab.com/mcfrith/last
|
|
doi: ""
|
|
licence: ["GPL v3-or-later"]
|
|
|
|
input:
|
|
- index:
|
|
type: directory
|
|
description: Directory containing the files of the LAST index
|
|
pattern: "lastdb/"
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastx:
|
|
type: file
|
|
description: FASTA/FASTQ file
|
|
pattern: "*.{fasta,fastq}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- param_file:
|
|
type: file
|
|
description: Trained parameter file
|
|
pattern: "*.par"
|
|
|
|
authors:
|
|
- "@aleksandrabliznina"
|