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https://github.com/MillironX/nf-core_modules.git
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52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: maxquant_lfq
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description: Run standard proteomics data analysis with MaxQuant, mostly dedicated to label-free. Paths to fasta and raw files needs to be marked by "PLACEHOLDER"
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keywords:
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- sort
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tools:
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- maxquant:
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description: MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted.
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homepage: None
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ['http://www.coxdocs.org/lib/exe/fetch.php?media=license_agreement.pdf']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- raw:
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type: file
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description: raw files with mass spectra
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pattern: "*.{raw,RAW,Raw}"
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- fasta:
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type: file
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description: fasta file with protein sequences
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pattern: "*.{fasta}"
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- parfile:
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type: file
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description: MaxQuant parameter file (XML)
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pattern: "*.{xml}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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- maxquant_txt:
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type: file
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description: tables with peptides and protein information
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pattern: "*.{txt}"
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authors:
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- "@veitveit"
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