mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
98ffb09002
* add unzip alleles + loci * fix the partial absolute prefix path * exchanged deprecated function + added metrics * updated meta * tested logRCorrection + cram input * added BED for WES * added outputs + alleleCounter version * test samtools chr operations, fixed cancerit conda * ch formatting, fasta, bed input * comment out local tests * added metrics, bed, ref_fasta * rm print statement * added stub outputs * rm versions.yml * fix linting * rm fictitious md5sums for stub-run * try fixing top-level of stub versions.yml * ordered inputs alphabetically, ref_fasta -> fasta * rm R system command, adjust meta.yml * prettier yml * added outputs + prefix to outputs * added test-yml outputs * change underscores to dots
23 lines
1.2 KiB
YAML
23 lines
1.2 KiB
YAML
- name: ascat test_ascat
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command: nextflow run tests/modules/ascat -entry test_ascat -c tests/config/nextflow.config -stub-run
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tags:
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- ascat
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files:
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- path: output/ascat/test.after_correction.gc_rt.test.tumour.germline.png
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- path: output/ascat/test.after_correction.gc_rt.test.tumour.tumour.png
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- path: output/ascat/test.before_correction.test.tumour.germline.png
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- path: output/ascat/test.before_correction.test.tumour.tumour.png
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- path: output/ascat/test.cnvs.txt
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- path: output/ascat/test.metrics.txt
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- path: output/ascat/test.normal_alleleFrequencies_chr21.txt
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- path: output/ascat/test.normal_alleleFrequencies_chr22.txt
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- path: output/ascat/test.purityploidy.txt
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- path: output/ascat/test.segments.txt
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- path: output/ascat/test.tumour.ASPCF.png
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- path: output/ascat/test.tumour.sunrise.png
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- path: output/ascat/test.tumour_alleleFrequencies_chr21.txt
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- path: output/ascat/test.tumour_alleleFrequencies_chr22.txt
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- path: output/ascat/test.tumour_normalBAF.txt
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- path: output/ascat/test.tumour_normalLogR.txt
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- path: output/ascat/test.tumour_tumourBAF.txt
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- path: output/ascat/test.tumour_tumourLogR.txt
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