mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
57 lines
1.5 KiB
YAML
57 lines
1.5 KiB
YAML
name: dragonflye
|
|
description: Assemble bacterial isolate genomes from Nanopore reads
|
|
keywords:
|
|
- bacterial
|
|
- assembly
|
|
- nanopore
|
|
|
|
tools:
|
|
- dragonflye:
|
|
description: Microbial assembly pipeline for Nanopore reads
|
|
homepage: https://github.com/rpetit3/dragonflye
|
|
documentation: https://github.com/rpetit3/dragonflye/blob/main/README.md
|
|
licence: ["GPL v2"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: Input Nanopore FASTQ file
|
|
pattern: "*.fastq.gz"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- contigs:
|
|
type: file
|
|
description: The final assembly produced by Dragonflye
|
|
pattern: "contigs.fa"
|
|
- log:
|
|
type: file
|
|
description: Full log file for bug reporting
|
|
pattern: "dragonflye.log"
|
|
- raw_contigs:
|
|
type: file
|
|
description: Raw assembly produced by the assembler (Flye, Miniasm, or Raven)
|
|
pattern: "{flye,miniasm,raven}.fasta"
|
|
- txt:
|
|
type: file
|
|
description: Assembly information output by Flye
|
|
pattern: "flye-info.txt"
|
|
- gfa:
|
|
type: file
|
|
description: Assembly graph produced by Miniasm, or Raven
|
|
pattern: "{miniasm,raven}-unpolished.gfa"
|
|
|
|
authors:
|
|
- "@rpetit3"
|