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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: minia
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description: Minia is a short-read assembler based on a de Bruijn graph
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keywords:
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- assembly
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tools:
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- minia:
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description: |
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Minia is a short-read assembler based on a de Bruijn graph, capable of assembling
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a human genome on a desktop computer in a day. The output of Minia is a set of contigs.
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homepage: https://github.com/GATB/minia
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documentation: https://github.com/GATB/minia
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licence: ["AGPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: Input reads in FastQ format
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pattern: "*.{fastq.gz, fastq}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- contigs:
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type: file
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description: The assembled contigs
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pattern: "*.contigs.fa"
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- unitigs:
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type: file
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description: The assembled unitigs
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pattern: "*.unitigs.fa"
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- h5:
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type: file
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description: Minia output h5 file
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pattern: "*{.h5}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@kevinmenden"
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