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nf-core_modules/tests/software
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Jose Espinosa-Carrasco 572abb00b3
Remove def from module options definition in main (#270) 
* Remove def from module options definition in main

* Fix bismark_deduplicate tests

* Fix bwameth_align tests

* Fixing gatk4 conda tests ("=" instead of ':' in build id)

* Same as previous commit (Fix gatk4 test)

* Fix qualimap bamqc test (no md5 check for pngs)

* Fix seqkit split2 tests. Changed to new test data

* Fix samtools tests. Some were missing initOptions include

* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
..
bandage/image Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bcftools Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
bedtools Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bismark Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
blast Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bowtie Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bowtie2 Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bwa Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bwamem2 Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bwameth Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
cat/fastq Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
cutadapt Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
dsh Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastp Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastqc Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
gatk4 Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
gffread Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
gunzip Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
ivar Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
methyldackel Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
minimap2/align Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
mosdepth Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
multiqc Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
pangolin add task.cpus to pangolin (#263) 2021-03-10 09:02:23 +01:00
picard Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
preseq/lcextrap Fix preseq tests 2021-02-03 17:28:44 +00:00
qualimap/bamqc Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
quast Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
salmon Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
samtools Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
seacr/callpeak Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
seqkit/split2 Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
seqwish/induce Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
star Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
stringtie Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
tabix Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
tiddit/sv Check only for vcf file to exists (includes cmd) 2021-02-26 07:14:29 +01:00
trimgalore Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
ucsc/bedgraphtobigwig Change path to tests 2021-02-03 16:44:56 +00:00
untar Converge test data usage (#249) 2021-03-04 10:10:57 +00:00