mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: biobambam_bammerge
|
|
description: Merge a list of sorted bam files
|
|
keywords:
|
|
- merge
|
|
- bam
|
|
tools:
|
|
- biobambam:
|
|
description: |
|
|
biobambam is a set of tools for early stage alignment file processing.
|
|
homepage: https://gitlab.com/german.tischler/biobambam2
|
|
documentation: https://gitlab.com/german.tischler/biobambam2/-/blob/master/README.md
|
|
doi: 10.1186/1751-0473-9-13
|
|
licence: ["GPL v3"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: List containing 1 or more bam files
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: Merged BAM file
|
|
pattern: "*.bam"
|
|
- bam_index:
|
|
type: file
|
|
description: BAM index file
|
|
pattern: "*"
|
|
- checksum:
|
|
type: file
|
|
description: Checksum file
|
|
pattern: "*"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@matthdsm"
|