nf-core_modules/tests/modules/bwa/sampe/test.yml at 9c31cf1566fa4f8660ac3973e02fe0caebe86235 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-23 03:28:17 +00:00

James A. Fellows Yates 4f1c1601cf

module: bwa/sampe (#625 )

* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Add bwa/aln module

* Also output reads as required with SAI

* Add sampe

* Fix container paths

* Update based on code review from @grst

* Update input docs

2021-08-02 15:37:48 +02:00

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 - name: bwa sampe
   command: nextflow run ./tests/modules/bwa/sampe -entry test_bwa_sampe -c tests/config/nextflow.config
   tags:
     - bwa
     - bwa/sampe
   files:
     - path: output/bwa/test.bam
       md5sum: f6ad85d66d44c5d26e692109d2e34100