nf-core_modules/modules/plink/vcf/meta.yml

53 lines
1.3 KiB
YAML

name: plink_vcf
description: Analyses variant calling files using plink
keywords:
- plink
- vcf
tools:
- plink:
description: |
Whole genome association analysis toolset, designed to perform a range
of basic, large-scale analyses in a computationally efficient manner
homepage: "https://www.cog-genomics.org/plink"
documentation: None
tool_dev_url: "https://www.cog-genomics.org/plink/1.9/dev"
doi: ""
licence: ['GPL']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: Variant calling file (vcf)
pattern: "*.{vcf}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bed:
type: file
description: PLINK binary biallelic genotype table
pattern: "*.{bed}"
- bim:
type: file
description: PLINK extended MAP file
pattern: "*.{bim}"
- fam:
type: file
description: PLINK sample information file
pattern: "*.{fam}"
authors:
- "@Mxrcon"
- "@abhi18av"