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81ed0e0ff2
* added meta.yml for umitools * Update modules/umitools/dedup/meta.yml type: list --> type: file Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/umitools/dedup/meta.yml aww thanks @drpateh :D Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/umitools/dedup/meta.yml module can only handle one BAM at a time, ergo BAM files --> BAM file Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update meta.yml added `pattern` for input `bam` and `bai` * removed trailing whitespace to appease linter * added license to new meta.yml files * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: umitools_dedup
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description: Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read.
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keywords:
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- umitools
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- deduplication
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tools:
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- umi_tools:
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description: >
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UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs)
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and single cell RNA-Seq cell barcodes
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documentation: https://umi-tools.readthedocs.io/en/latest/
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license: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: |
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BAM file containing reads to be deduplicated via UMIs.
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pattern: "*.{bam}"
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- bai:
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type: file
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description: |
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BAM index files corresponding to the input BAM file.
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pattern: "*.{bai}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM file with deduplicated UMIs.
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pattern: "*.{bam}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@grst"
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- "@klkeys"
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