mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
55 lines
1.4 KiB
YAML
55 lines
1.4 KiB
YAML
name: porechop
|
|
description: Adapter removal and demultiplexing of Oxford Nanopore reads
|
|
keywords:
|
|
- adapter
|
|
- nanopore
|
|
- demultiplexing
|
|
tools:
|
|
- porechop:
|
|
description: Adapter removal and demultiplexing of Oxford Nanopore reads
|
|
homepage: "https://github.com/rrwick/Porechop"
|
|
documentation: "https://github.com/rrwick/Porechop"
|
|
tool_dev_url: "https://github.com/rrwick/Porechop"
|
|
doi: "10.1099/mgen.0.000132"
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: fastq/fastq.gz file
|
|
pattern: "*.{fastq,fastq.gz,fq,fq.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- reads:
|
|
type: file
|
|
description: Demultiplexed and/or adapter-trimmed fastq.gz file
|
|
pattern: "*.{fastq.gz}"
|
|
- log:
|
|
type: file
|
|
description: Log file containing stdout information
|
|
pattern: "*.log"
|
|
|
|
authors:
|
|
- "@ggabernet"
|
|
- "@jasmezz"
|
|
- "@d4straub"
|
|
- "@LaurenceKuhl"
|
|
- "@SusiJo"
|
|
- "@jonasscheid"
|
|
- "@jonoave"
|
|
- "@GokceOGUZ"
|
|
- "@jfy133"
|