mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
15 lines
435 B
Text
15 lines
435 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { IVAR_TRIM } from '../../../../software/ivar/trim/main.nf' addParams([:])
|
|
|
|
workflow test_ivar_trim {
|
|
bed_file = file("${launchDir}/tests/data/bed/test-sc2-artic-v3.bed", checkIfExists: true)
|
|
|
|
def input = []
|
|
input = [ [ id:'test'],
|
|
file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true) ]
|
|
|
|
IVAR_TRIM ( input, bed_file )
|
|
}
|