mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2025-01-18 02:46:13 -05:00
f32dc15414
* update bclconvert module, as used in nf-core/demultiplex * reconfigure test with new test data * update test * formatting * update outputs, update meta * update module and test * update test config, test.yml * fix linting * emit logs and reports as dir * fix typo, recreate test.yml * fix linting Co-authored-by: CMGG ICT Team <ict@cmgg.be>
44 lines
2.3 KiB
YAML
44 lines
2.3 KiB
YAML
- name: bclconvert test_bclconvert
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command: nextflow run ./tests/modules/bclconvert -entry test_bclconvert -c ./tests/config/nextflow.config -c ./tests/modules/bclconvert/nextflow.config
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tags:
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- bclconvert
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files:
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- path: output/bclconvert/Logs/Errors.log
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- path: output/bclconvert/Logs/FastqComplete.txt
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- path: output/bclconvert/Logs/Info.log
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- path: output/bclconvert/Logs/Warnings.log
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- path: output/bclconvert/Reports/Adapter_Metrics.csv
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md5sum: 989240b8840b2169ac1061f952c90f6c
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- path: output/bclconvert/Reports/Demultiplex_Stats.csv
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md5sum: bb2ed9c6b46e03fbc060efd2c75398b0
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- path: output/bclconvert/Reports/IndexMetricsOut.bin
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md5sum: 9e688c58a5487b8eaf69c9e1005ad0bf
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- path: output/bclconvert/Reports/Index_Hopping_Counts.csv
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md5sum: 1059369e375fd8f8423c0f6c934be978
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- path: output/bclconvert/Reports/Quality_Metrics.csv
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md5sum: 6614accb1bb414fe312b17b81f5521f7
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- path: output/bclconvert/Reports/RunInfo.xml
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md5sum: 03038959f4dd181c86bc97ae71fe270a
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- path: output/bclconvert/Reports/SampleSheet.csv
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md5sum: dc0dffd39541dd6cc5b4801d768a8d2b
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- path: output/bclconvert/Reports/Top_Unknown_Barcodes.csv
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md5sum: 2e2faba761137f228e56bd3428453ccc
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- path: output/bclconvert/Reports/fastq_list.csv
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md5sum: 05bc84f51840f5754cfb8381b36f2cb0
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- path: output/bclconvert/Sample1_S1_L001_R1_001.fastq.gz
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md5sum: 883037281293a2ec4995d34257f19866
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- path: output/bclconvert/Undetermined_S0_L001_R1_001.fastq.gz
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md5sum: a4745abc5e7fdb89cc6df3069f3c6e69
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- path: output/bclconvert/flowcell/InterOp/ControlMetricsOut.bin
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md5sum: 6d77b38d0793a6e1ce1e85706e488953
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- path: output/bclconvert/flowcell/InterOp/CorrectedIntMetricsOut.bin
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md5sum: 2bbf84d3be72734addaa2fe794711434
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- path: output/bclconvert/flowcell/InterOp/ErrorMetricsOut.bin
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md5sum: 38c88def138e9bb832539911affdb286
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- path: output/bclconvert/flowcell/InterOp/ExtractionMetricsOut.bin
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md5sum: 7497c3178837eea8f09350b5cd252e99
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- path: output/bclconvert/flowcell/InterOp/IndexMetricsOut.bin
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- path: output/bclconvert/flowcell/InterOp/QMetricsOut.bin
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md5sum: 7e9f198d53ebdfbb699a5f94cf1ed51c
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- path: output/bclconvert/flowcell/InterOp/TileMetricsOut.bin
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md5sum: 83891751ec1c91a425a524b476b6ca3c
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